Illes

GNAT NER

GNAT is a library and web service capable of performing gene entity NER and normalization of biomedical articles. Mentions of genes and proteins in the articles are linked to to Entrez Gene identifiers. GNAT is available both for local download (suitable for large-scale processing) and as a web ... [More] service (suitable for more limited processing or testing). A combination of local and remote processing is also available, where CPU-heavy operations are performed locally and memory-intensive operations are performed remotely (this is suitable for large-scale processing where a large amount of memory is not available). GNAT uses LINNAEUS (Gerner et al., 2010) for species detection and BANNER (Leaman et al., 2008) in one part of its false positive filtering process. [Less]

PPI Benchmark

A comprehensive benchmark of kernel methods to extract protein-protein interactions from literature.

Sztakipedia parser

Sztakipedia parser is a wikitext to HTML converter written in java language which (partially) supports the syntax understood by MediaWiki, Wikipedia's wiki engine. It was developed for the Sztakipedia project at MTA SZTAKI in Hungary. It uses JavaCC to parse the source wikitext and build an ... [More] abstract syntax tree from which the html output is generated. The output generation can be expanded or modified through a java interface. [Less]

Multimodal

Multimodal medical image classification written in C++ and Java using Hadoop, Mahout and Weka.

Sztakipedia toolbar

Sztakipedia toolbar integrates into MediaWiki's WikiEditor, the default editor on most Wikipedia sites to offer the editors semantic services like link, category, infobox and book suggestions. The user can insert suggestions as correctly formatted wikitext by a single click. Sztakipedia ... [More] toolbar is developed as part of the Sztakipedia project at MTA SZTAKI. [Less]