This computes protein yield and reading frame displacement given a sequence of codons in addition to writing an infinite amount of tools to analyze or help generate those metrics.

Throw in Perl for extra sexiness.

Journal Entries

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bwf If you want nightmares, check out (har har) displacement.m. shadytrees — 12 months ago

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bwf Grappling with the mighty ruins that are Genbank and its awful Nucleotide gene loci format, a format that requires you to undo its *text wrapping* before parsing, a format with the boldness to not have any documentation. shadytrees — 12 months ago

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Bio::Phylo, Cipres-perl, GenoViz, Madeline, nexml


Project Cost

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Codebase 2,766
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$ 32,013