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  Analyzed about 8 hours ago based on code collected about 8 hours ago.

THIS SITE HAS BEEN MIGRATED TO SOURCEFORGESourceforge Web SiteSourceforge Project PageProject ScriptsThe following is the previous documentation on this site.

IntroductionThis is the code repository for DAWG-PAWS A Distributed Annotation Working Group Pipeline to Annotate Wheat Sequences. DAWG-PAWS is a set of command line programs written in Perl and is released under version 3 of the GNU General Public License. Scripts in development are available for individual download at the project's subversion repository. These scripts are not all stable and are subject to change without notice. Information for downloading the entire set of scripts is available in the project's Source section.

The DAWG-PAWS program assumes that you are annotating BAC sized contigs of a plant genome. The process treats each contig as a separate unit of analysis.

A number of programs that may be useful a la carte include:

cnv_tenest2gff.pl - Convert TE Nest output to gff format. batch_findmite.pl - Run the findmite program in batch mode. batch_mask.pl - Run the RepeatMasker program in batch mode.

General Annotation SoftwareApollo - Apollo is a genome annotation curation tool. The Apollo program is the main workbench for visualizing all gff output from the DAWG-PAWS scripts. TE Annotation SoftwareFIND_LTR ltr_finder.pl FINDMITE

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Perl 		98%
5 Other 		2%
 
 

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30 Day Summary Apr 24 2013 — May 24 2013

12 Month Summary May 24 2012 — May 24 2013

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Creative Commons License Copyright © 2013 Black Duck Software, Inc. and its contributors, Some Rights Reserved. Unless otherwise marked, this work is licensed under a Creative Commons Attribution 3.0 Unported License . Ohloh ® and the Ohloh logo are trademarks of Black Duck Software, Inc. in the United States and/or other jurisdictions. All other trademarks are the property of their respective holders.