Project Summary
Several RNA and protein volume calculation tools including:
Cavity Extractor — extracts the cavities for a given probe radius
Channel Extractor — extracts a particular channel from the solvent
FSV Calculator — calculates the Fractional Solvent Volume
Solvent Extractor — extracts the all of the solvent
Tunnel Extractor — extracts the ribosomal exit tunnel from the H. marismortui structure
VDW Calculator — calculate the van der Waals volume and surface area
Volume Calculator — calculate the volume and surface area for any probe radius
REFERENCES1. NR Voss, M Gerstein, TA Steitz, PB Moore. "The geometry of the ribosomal polypeptide exit tunnel." J Mol Biol. v360 (4): 2006, pp. 893-906. download pdf Pubmed ID: 16784753
2. NR Voss "Geometric Studies of RNA and Ribosomes, and Ribosome Crystallization" PhD dissertation, Yale University, 2007 download pdf
Quick Reference
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Homepage
- Code Locations:
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http://vossvolvox.googlecode.com...
- Licenses:
- GPL-2.0+
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In a Nutshell, vossvolvox...
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took an estimated 1 years of effort (COCOMO model)
starting with its first commit in August, 2007
ending with its most recent commit almost 6 years ago
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30 Day Summary May 13 2013 — Jun 12 2013
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12 Month Summary Jun 12 2012 — Jun 12 2013
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Copyright
©
2013
Black Duck Software, Inc.
and its contributors, Some Rights Reserved. Unless otherwise marked, this work is licensed under a
Creative Commons Attribution 3.0 Unported License
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Black Duck Software, Inc.
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