Projects tagged ‘bio-informatics’ and ‘c++’

Open Babel is a chemical toolbox designed to speak the many languages of chemical data. It's an open, collaborative project allowing anyone to search, convert, analyze, or store data from molecular ... [More] modeling, chemistry, solid-state materials, biochemistry, or related areas. [Less]

Avogadro is an advanced molecular editor designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas. It offers flexible rendering and a powerful plugin architecture.

QuteMol is an open source (GPL), interactive, high quality molecular visualization system. QuteMol exploits the current GPU capabilities through OpenGL shaders to offers an array of innovative visual ... [More] effects. QuteMol visualization techniques are aimed at improving clarity and an easier understanding of the 3D shape and structure of large molecules or complex proteins. * Real Time Ambient Occlusion * Depth Aware Silhouette Enhancement * Ball and Sticks, Space-Fill and Liquorice visualization modes * High resolution antialiased snapshots for creating publication quality renderings * Automatic generation of animated gifs of rotating molecules for web pages animations * Interactive rendering of large molecules and protein (>100k atoms) * Standard PDB input [Less]

R'MES is a set of command-line tools to assess the exceptionality of words or families of words in biological sequences. Using different mathematical models it gives a statistical measure of how much ... [More] occurrences of words in sequences deviate from their expected values, an can thus single out words having a potential biological interest. It has already been used to prove on a statistical basis that a specific motif (called CHI) is over-represented in certain kind of bacteria. R'MES is an initiative of the Applied Mathematics and Computing division of the french Agronomical Research Institute (INRA). [Less]

The Madeline 2.0 Pedigree Drawing Engine is a pedigree drawing program designed to handle large and complex pedigrees with an emphasis on readability and aesthetics. Although the program takes ... [More] inspiration from Madeline v. 0.935, the Madeline 2.0 Pedigree Drawing Engine, or just Madeline 2.0 for short, is in fact a completely new program written from scratch. [Less]

A collection of cheminformatics and machine-learning software written in C++ and Python.

The Staden Package is a set of interactive tools for DNA sequence assembly and editing, as well as DNA and protein sequence analysis, the best known of which is "gap4".

PD - Molecular Simulation Software