Projects tagged ‘bio-informatics’ and ‘cross-platform’

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Projects tagged ‘bio-informatics’ and ‘cross-platform’

Filtered by Project Tags bio-informatics cross-platform

Refine results Project Tags bioinformatics (9) biology (8) science (7) toolkit (5) perl (4) xml (3) phylogenetics (3) java (3) scientific (3) visualisation (2) genetics (2) visualization (2)

[9 total ]

14 Users
BioPerl
   

Bioperl is a large, object-oriented toolkit of interacting perl modules useful for building bioinformatics solutions in Perl. The collection of modules in the bioperl-live repository contains the core ... [More] functionality. Additional packages for creating graphical interfaces (bioperl-gui), setting up persistent ORM storage in RDMBS (bioperl-db), running and parsing the results from hundreds of bioinformatics applications (bioperl-run), and software to automate bioinformatic analyses (bioperl-pipeline) are all available from our Subversion repository. [Less]
Created over 2 years ago.

10 Users
BioJava
   

BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It include objects for manipulating biological sequences, file parsers, DAS client and server ... [More] support, access to BioSQL and Ensembl databases, tools for making sequence analysis GUIs and powerful analysis and statistical routines including a dynamic programming toolkit. BioJava is used in several real-world bioinformatics applications and has been used for bioinformatics analysis in a number of published studies. [Less]
Created over 2 years ago.

2 Users
nexml

XML-based data exchange standard for phylogenetics. In honor of the commonly-used "nexus" flat file format, the working title for this standard is nexml.
Created over 2 years ago.

2 Users
BioPython
   

The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology. It is a distributed collaborative effort to develop Python ... [More] libraries and applications which address the needs of current and future work in bioinformatics. The source code is made available under the Biopython License, which is extremely liberal and compatible with almost every license in the world. We work along with the Open Bioinformatics Foundation, who generously provide web and CVS space for the project. [Less]
Created over 2 years ago.

1 Users
Cipres-perl

Perl stack for the Cyber-Infrastructure for Phylogenetic Research (CIPRES)
Created over 2 years ago.

1 Users
GenoViz
 

The GenoViz project provides tools for genomics data visualization. It consists of the following: 1) the GenoViz SDK, a library of re-usable components, 2) the Genometry data model to represent ... [More] relationships between biological sequences, and 3) the Integrated Genome Browser (IGB, "igbee"), an application built upon the GenoViz SDK and Genometry for visualization and exploration of genomes and corresponding annotations from multiple data sources. IGB supports the Distributed Annotation System (DAS) protocol, version 1 and 2, as well as other optimized binary data formats that are designed for efficient exploration of large, whole genome data sets. [Less]
Created over 2 years ago.

1 Users
Bio::Phylo

Phylogenetic analysis using perl.
Created over 2 years ago.

1 Users
BioDAS

The Distributed Annotation System (DAS) defines a communication protocol used to exchange biological sequence annotations. DAS is a client-server system in which a single client integrates data from ... [More] multiple servers. Data distribution, performed by DAS servers, is separated from visualization, which is done by DAS clients. Little coordination is needed among the various information providers. DAS is heavily used in the genome bioinformatics community for sharing information about gene and protein sequences as well as protein structures. [Less]
Created about 1 year ago.

0 Users
Madeline
 

The Madeline 2.0 Pedigree Drawing Engine is a pedigree drawing program designed to handle large and complex pedigrees with an emphasis on readability and aesthetics. Although the program takes ... [More] inspiration from Madeline v. 0.935, the Madeline 2.0 Pedigree Drawing Engine, or just Madeline 2.0 for short, is in fact a completely new program written from scratch. [Less]
Created about 1 year ago.
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