Projects tagged ‘bio-informatics’ and ‘molecular_science’

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Projects tagged ‘bio-informatics’ and ‘molecular_science’

Filtered by Project Tags bio-informatics molecular_science

Refine results Project Tags chemistry (8) cheminformatics (7) research (6) framework (5) c++ (5) visualization (4) bioinformatics (4) code (3) java (3) python (2) chemoinformatics (2) text_processing (1)

[11 total ]

11 Users
Jmol

Jmol is a Java molecular viewer for three-dimensional chemical structures. Features include reading a variety of file types and output from quantum chemistry programs, and animation of multi-frame ... [More] files and computed normal modes from quantum programs. [Less]
Created over 3 years ago.

9 Users
Open Babel
 

Open Babel is a chemical toolbox designed to speak the many languages of chemical data. It's an open, collaborative project allowing anyone to search, convert, analyze, or store data from molecular ... [More] modeling, chemistry, solid-state materials, biochemistry, or related areas. [Less]
Created over 3 years ago.

8 Users
Avogadro
   

Avogadro is an advanced molecular editor designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas. It offers flexible rendering and a powerful plugin architecture.
Created over 3 years ago.

4 Users
JChemPaint Applet and Swing Application
   

JChemPaint is a program for drawing 2D chemical structures like those found in most chemistry textbooks.
Created over 3 years ago.

3 Users
JOELib
   

JOELib/JOELib2 is a cheminformatics library which supports SMARTS substructure search, descriptor calculation, processing/filtering pipes, conversion of file formats, 100% pure Java, and interfaces to external programs (e.g. Ghemical) are available.
Created over 3 years ago.

2 Users
QuteMol

QuteMol is an open source (GPL), interactive, high quality molecular visualization system. QuteMol exploits the current GPU capabilities through OpenGL shaders to offers an array of innovative visual ... [More] effects. QuteMol visualization techniques are aimed at improving clarity and an easier understanding of the 3D shape and structure of large molecules or complex proteins. * Real Time Ambient Occlusion * Depth Aware Silhouette Enhancement * Ball and Sticks, Space-Fill and Liquorice visualization modes * High resolution antialiased snapshots for creating publication quality renderings * Automatic generation of animated gifs of rotating molecules for web pages animations * Interactive rendering of large molecules and protein (>100k atoms) * Standard PDB input [Less]
Created over 2 years ago.

1 Users
IntAct
 

IntAct is an open source package to store and manipulate molecular interaction data.
Created over 3 years ago.

0 Users
RDKit

A collection of cheminformatics and machine-learning software written in C++ and Python.
Created over 2 years ago.

0 Users
PD

PD - Molecular Simulation Software
Created about 1 year ago.
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