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BioMart is a query-oriented data management system developed jointly by the European Bioinformatics Institute (EBI) and Cold Spring Harbor Laboratory (CSHL). The system can be used with any type of data and comes with a range of query interfaces and administration tools, including 'out of the ... [More]
GNAT is a library and web service capable of performing gene entity NER and normalization of biomedical articles. Mentions of genes and proteins in the articles are linked to to Entrez Gene identifiers. GNAT is available both for local download (suitable for large-scale processing) and as a web ... [More]
FlyGATE is a knowledge database dedicated to the transposable element (TEs) sequences of the Drosophila melanogaster genome.
MOLGENIS can be used to generate databases for life science experiments (micrroarray, mass spectrometry, genomics) having a web user interface, csv exchange format, and programmatic interfaces (web services, rest, and r-project). See NatRevGen 8.
A comprehensive benchmark of kernel methods to extract protein-protein interactions from literature.
This program presents proteomics data (protein and peptide sequences) in a user-friendly way. Typically, the peptide sequences are found with a mass spectrometer, and the protein sequences are found by sequencing a genome.
A web database and bioinformatics analysis tool for gene families involved in antigenic variation and immune system evasion in pathogens.
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