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Jmol

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  Analyzed 3 days ago

Jmol is a Java molecular viewer for three-dimensional chemical structures. Features include reading a variety of file types and output from quantum chemistry programs, and animation of multi-frame files and computed normal modes from quantum programs.

474K lines of code

7 current contributors

4 days since last commit

13 users on Ohloh

Very High Activity
4.0
   

BioJava

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  Analyzed 5 days ago

BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It include objects for manipulating biological sequences, file parsers, DAS client and server support, access to BioSQL and Ensembl databases, tools for making sequence analysis GUIs and powerful analysis and statistical routines i... [More]

321K lines of code

23 current contributors

8 days since last commit

13 users on Ohloh

High Activity
4.5
   

SHOGUN

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  Analyzed 3 days ago

The SHOGUN machine learning toolbox's focus is on large scale kernel methods and especially on Support Vector Machines (SVM). It comes with a generic interface for SVMs, features several SVM and kernel implementations, includes LinAdd optimizations and also Multiple Kernel Learning algorithms. SHOGUN also implements a number of linear ... [More]

582K lines of code

56 current contributors

3 days since last commit

11 users on Ohloh

Very High Activity
5.0
 

GenoViz

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  Analyzed 4 days ago

The GenoViz project provides tools for genomics data visualization. It consists of the following: 1) the GenoViz SDK, a library of re-usable components, 2) the Genometry data model to represent relationships between biological sequences, and 3) the Integrated Genome Browser (IGB, "igbee"), an application built upon the GenoViz SDK and ... [More]

227K lines of code

8 current contributors

8 days since last commit

4 users on Ohloh

High Activity
5.0
 

QuteMol

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  Analyzed 1 day ago

QuteMol is an open source (GPL), interactive, high quality molecular visualization system. QuteMol exploits the current GPU capabilities through OpenGL shaders to offers an array of innovative visual effects. QuteMol visualization techniques are aimed at improving clarity and an easier understanding of the 3D shape and structure of lar... [More]

11.1K lines of code

0 current contributors

Almost 7 years since last commit

2 users on Ohloh

Inactive
0
 

bio-charm

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  Analyzed 5 days ago

CHarm provides codon harmonization for heterologous expression systems.

552 lines of code

1 current contributors

18 days since last commit

1 users on Ohloh

New Project
0
 

R'MES

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  Analyzed about 22 hours ago

R'MES is a set of command-line tools to assess the exceptionality of words or families of words in biological sequences. Using different mathematical models it gives a statistical measure of how much occurrences of words in sequences deviate from their expected values, an can thus single out words having a potential biological interes... [More]

31.7K lines of code

0 current contributors

Almost 4 years since last commit

1 users on Ohloh

Inactive
0
 

MOLGENIS model-driven database platform

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  Analyzed about 1 year ago

MOLGENIS can be used to generate databases for life science experiments (micrroarray, mass spectrometry, genomics) having a web user interface, csv exchange format, and programmatic interfaces (web services, rest, and r-project). See NatRevGen 8.

523K lines of code

60 current contributors

Over 1 year since last commit

1 users on Ohloh

Activity Not Available
4.0
   

PPI Benchmark

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  Analyzed 10 months ago

A comprehensive benchmark of kernel methods to extract protein-protein interactions from literature.

721K lines of code

2 current contributors

Over 1 year since last commit

1 users on Ohloh

Activity Not Available
0
 
Licenses: No declared licenses

sharpton-thesis

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  Analyzed 1 day ago

The data and code in this repository were leveraged in the production of several comparative genomics research analyses, including an investigation of rates and mechanisms of intron gain and loss in Cryptococcus, an exploration of genome evolution in the human fungal pathogens Coccidioides, and a fungal kingdom-wide analysis of simp... [More]

0 lines of code

0 current contributors

0 since last commit

0 users on Ohloh

Activity Not Available
0
 
Mostly written in language not available
Licenses: GPL-3.0+