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Conservation managers are faced with the problem of having many species that are in need of conservation but limited funds to allocate to them. This raises the question of which species should be protected. One framework for prioritising species for conservation is the Noah's Ark Problem (NAP). ... [More]
Various PERL scripts that I have written for processing bioinformatics data as well as general PERL subfunctions that I use. These scripts are all intended to be stand alone programs with most having a command line interface. Some of these scripts rely on the bioperl library. I use all of these ... [More]
THIS SITE HAS BEEN MIGRATED TO SOURCEFORGESourceforge Web SiteSourceforge Project PageProject ScriptsThe following is the previous documentation on this site. IntroductionThis is the code repository for DAWG-PAWS A Distributed Annotation Working Group Pipeline to Annotate Wheat Sequences. ... [More]
The Gene Ontology Consortium provides structured, controlled vocabularies and classifications that cover several domains of molecular biology and are freely available for community use in the annotation of genes, gene products, and sequences.
BioSwf is an Actionscript 3 library modeled after the BioPerl and BioJava efforts. With similar intent, BioSwf classes will aid Flash developers in handling common biological data structures and tasks.
The data and code in this repository were leveraged in the production of several comparative genomics research analyses, including an investigation of rates and mechanisms of intron gain and loss in Cryptococcus, an exploration of genome evolution in the human fungal pathogens Coccidioides, and a ... [More]
AlignDB - convert genomic alignment files to an indel-concentrated database Default format is BlastZ .axt format