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ProDy is a free and open-source Python package for analysis and modeling of protein structural dynamics. It allows for efficient analysis of large datasets and is suitable for development or prototyping of structure-based analysis and modeling software.
A simple web front end to NCBI BLAST+ that lets users share, and consume sequence data intuitively. "The iPod of Blast searching" Set up your local BLAST server in minutes...
Actually bioinformatics needs new tools that provides complete and valid information faster and easy.to extract sequences from genbank or another data sources. to process sequences and to fill databases. to represent sequences in a human readable user interface. your request. You will needMono ... [More]
Furnace is a grid-enabled version of NCBI BLAST. Furnace takes files in FASTA format, splits them into sequences of configurable length, and submits them to a grid for processing. Each grid node runs the sequence against an instance of NCBI BLAST.
jjv is an open source gene finding application designed to annotate prokaryote genomes. It uses a two phase search; the first is a "content-based" search designed to find candidate genes and the second is a "similarity-based" search, using a known genome to compare the candidate ... [More]
The main idea of PANIC@Home, based on the program Blast, distribute the workload thought the web in a easy way. Using java clients to pick sequences from a server, compare and put the result in the server again. Without Globus, MPI, PVM, nothing! Just a Java client, and a LAMP or WAMP server. =)
This project sequences a give set of DNA sequences against Arabidopsis CDS file in TAIR database. It is useful if you want to know how good is your PCR results. The inputs are
GUI for highly used command-line bioinformatics tools such as BLAST, BLAST Parser.Currently, I am rewriting all the modules. You can read the the news on the BioGUI blog (on the right of your screen) for the development. The following GUIs are available: GUI Seq: A GUI for biological sequence ... [More]
mpiblast is a powerful tool for searching dna sequences. This project seeks to provide a simplified and unified interface to install recent versions of ncbi toolkit and the mpiblast primary sources.