Projects

TORQUE Resource Manager

TORQUE is an open source resource manager providing control over batch jobs and distributed compute nodes. It is a community effort based on the original *PBS project and, with more than 1,200 patches, has incorporated significant advances in the areas of scalability, fault tolerance, and feature ... [More] extensions contributed by NCSA, OSC, USC , the U.S. Dept of Energy, Sandia, PNNL, U of Buffalo, TeraGrid, and many other leading edge HPC organizations. [Less]

GridGain

GridGain is an open-source Java-based grid computing platform that is changing the world of grid computing in the same way as JBoss and Spring Framework reshaped J2EE market.

Shared Questionnaire System

Shared Questionnaire System(SQS) is a full-functional Optical Mark Reader(OMR) form processing system implemented in Java-Swing, XSL-FO and AJAX with straightforward GUIs. It is aimed at developing social platform to share knowledge about questionnaire based on XML standards. You can install and ... [More] launch them easily from your Web browser with Java Web Start. It lets you use plain paper and general purpose document scanners for OMR form processing. [Less]

Exome Variant Analysis

Exome Variant Analysis Pipeline (NGS Data). Developed in R language, calling external programs for specific tasks. It can be run in parallel using many processors from the same machine, and can be easily extended to run in computer clusters (HPC). Still in its early stages, it's a work in ... [More] progress that is being used already for production in some research centers. Features: * Quality Control * Mapping in a reference genome * Tasks related to variants: ** Calling ** Filtering ** Annotating ** Reporting effects and basic statistics * Sending an email once the run is finished. More information: ueb(a)vhir.org [Less]

PPIV

PPIV is a parallel software application used in Particle Image Velocimetry (PIV) analysis. The software will compute the vector field for one image pair or multiple image pairs. PPIV can run on a single desktop machine or in a cluster environment.

RDFgrid

RDFgrid is a framework for batch-processing RDF data with Hadoop and Amazon Elastic MapReduce.

GC3Pie

gc3pie is a suite of Python classes (and command-line tools built upon them) to aid in submitting and controlling batch jobs to clusters and grid resources seamlessly. gc3pie aims at providing the building blocks by which Python scripts that combine several applications in a dynamic workflow can be ... [More] quickly developed. The gc3pie suite is comprised of two main components: * gc3libs: A python package for controlling the life-cycle of a Grid or batch computational job * gc3utils: Command-line tools exposing the main functionality provided by gc3libs [Less]

Spark Cluster Computing

Spark is an open source cluster computing system that aims to make data analytics fast — both fast to run and fast to write. To run programs faster, Spark provides primitives for in-memory cluster computing: your job can load data into memory and query it repeatedly more rapidly than with ... [More] disk-based systems like Hadoop. To make programming faster, Spark integrates into the Scala language, letting you manipulate distributed datasets like local collections. You can also use Spark interactively to query big data from the Scala interpreter. [Less]

gridscale

GridScale allows to access remote job and storage services and to manage files / jobs life cycle. It supporst EGI Grid, PBS / SGE clusters, SSH, HTTP, local filesystem...

g-task

This framework enables small to mid-sized organizations to create robust meta-processes which interface with common GIS and Image Processing systems. Python is the tool used to bind this framework to external engines. Code for binding G-Task to the Idrisi GIS system is provided.