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The Mindquarry Collaboration Server is an integrated set of tools for better teamwork including file sharing with version control, WYSIWYG-Wiki, and easy-to-use task management. It is accompanied by a small desktop client that allows desktop synchronization, and features a small todo list.
Morcego is a 3D network browser written in Java and released under LGPL license. It can be embedded in web applications using XMLRPC no represent graph-like data and browse nodes.