Projects

CFEngine

CFEngine is the long-standing and visionary computer management software used on over a million computers around the world. CFEngine leads the industry with: - Real-time, policy-based repair - Automation and documentation of business and IT-processes - More than 15 years of experience ... [More] , security and stability - One of few true self-healing software solutions in the industry - A scalable solution for freeing up system administration time CFEngine is used by industry leaders, governments and the military worldwide. [Less]

maven-dependency-browser

This project is no longer actively maintainedThe eclipse/maven integration project q4e has an actively maintained dependecy browser gui, with better dependency resolution and additional dependeny management features. Allows the browsing (but not editing) of maven 2 transitive dependency trees. As ... [More] of version beta-4 the browser uses maven components internally wherever possible and supports inheritance, properties and some dependency management. Limitations are discussed in more detail here. For more information see the wiki DownloadLatest Version (1.0-beta-7 ChangeLog) RunningYou must run maven on your project first so that it populates the local repository! The download is an executable jar and needs Java 1.4 or higher to run. Enter the location of your workspace and maven local repository directories and then click Load to load a pom for analysis. For more detail see the wiki. UsesProvides an unfiltered view on a project's dependency tree. intended to complement the information provided by the maven dependency plugin. Locate source of dependencies with multiple versions in a given dependency tree (convergence in maven terminology). Pinpoint all sources for a given transitive dependency. Show the number of leaf dependencies under a given node. PanelsLeft Panel: Dependency tree, selected project is the root of the tree. Dependencies are displayed as: group.id:artifact:version(scope)[sub-dependencies] eg org.dependencybrowser:maven-dependency-browser:1.0-beta-x(compile)[29] is interpreted as: groupId = org.dependencybrowser artifactId = maven-dependency-browser version = 1.0-beta-x scope = compile number of leaf dependency nodes under this node = 29 Top Right Panel: A list of all artifacts and versions in the entire tree. Clicking on a row will will highlight the selected version of the artifact in the tree. Sortable by clicking the column headers. Instances is the number of times this artifact and version appears in the entire dependency tree. Bottom Right Panel: A list of all dependencies in the the tree with more than one version. Clicking on a row will will highlight all versions of the artifact in the tree. Top Panel: settings and commands: Load - load a pom for analysis Scopes (compile, test, runtime, provided) - include checked scopes in the tree Exclusions - if checked then artifacts excluded using ... tags are excluded Snapshot - save a snapshot of the poms in your workspace and repository to a zip file. See IssueLogging for more details on what this does and why you might want to use it. [Less]

jwcf

A jee web merging framework.

lovoalign

lovoalignLovoalign is a new structural alignment package. The methods used for structural alignment are based on Low Order Value Optimization (LOVO) theory. The use of LOVO theory led to the development of fast convergent algorithms that provide very robust optimization of scoring functions. ... [More] Numerical experiments show that the LOVO algorithms implemented here provide the most reliable optimization of the STRUCTAL alignment while being very fast. Simple input parameters can be used to align two structures, a single structure to a whole database, or to perform an all-on-all database structural alignment. See http://www.ime.unicamp.br/~martinez/lovoalign The present site is contains current and previous versions of the package. The alignment can be highly customized, since any subatom selection of the structures, main chains or not, can be aligned by using the "-beta and -ocup" input options. How to install and useCurrently the package is mostly developed for linux/unix users. Under those systems, instalation is done by: 1 - Download the lovoalign.DATE.tar.gz file. 2 - Unpack it and compile it: tar -xzvf lovoalign.DATE.tar.gz cd lovoalign ./configure make(You must have some fortran compiler installed) The directory lovoalign/input contains an example input file for the "lovoalign.sh" script, which is mostly self-explicative, but required the Visual Molecular Dynamics (VMD) package. With this input file, run lovoalign.sh with: lovoalign.sh lovoalign.inp Otherwise, the "lovoalign" executable can be run as a standalone program, as indicated by the instructions in the lovoalign main site. ReferencesPrimary reference, please cite this work when using lovoalign: L. Martinez, R. Andreani, J. M. Martinez. Convergent algorithms for protein structural alignment BMC Bioinformatics, 8:306 2007 Full Text Related work: R. Andreani, J. M. Martinez, L. Martinez, F. Yano. Continuous Optimization Methods for Structural Alignment. Mathematical Pogramming, 112:93-124, 2008 article R. Andreani, J. M. Martinez, L. Martinez Trust region superposition methods for protein alignment IMA Journal on Numerical Analysis, 28, 690-710, 2008. article R. Andreani, J. M. Martinez, L. Martinez, F. Yano. Low Order Value Optimization and Applications. Journal of Global Optimization, 43, 1-22, 2009. article For full text articles go to http://www.ime.unicamp.br/~martinez/lovoalign [Less]

kac-ring-animation

This project will consist from a simple GUI and an animation in Python.

randomwalk-report

Some notes taken by Bangsheng Tang, and Youming Qiao, mainly focused on Random walk on graphs, spectral graph theory, and expander graph. Both of the authors are currently Ph.D students at Institute of Theoretical Computer Science, Tsinghua University. Note that this note is just a survey on ... [More] basic concepts and known results, so we do not claim any of the results in this survey. Also due to the fact that the authors are very weak, there must be a number of mistakes in this survey and some good results are not included. If you find them, we would be pleased if you can point out to us. Thanks in advance! [Less]

convergence-tsp

L'idée est simple : faire converger les emplois du temps des différents personnes devant se rencontrer vers une même date commune.