Projects

GammaLib

A versatile toolbox for high-level analysis of astronomical gamma-ray data. GammaLib is a self-contained, instrument independent, open source, multi-platform C++ library that implements all code required for high-level science analysis of astronomical gamma-ray data. GammaLib is also wrapped into a Python module.

ctools_

CTA Science Tools

Sumatra

Sumatra is a tool for managing and tracking projects based on numerical simulation or analysis, with the aim of supporting reproducible research. It can be thought of as an automated electronic lab notebook for simulation/analysis projects.

rattle

OverviewRattle (the R Analytical Tool To Learn Easily) provides a simple and logical interface for data mining. It is a new data mining application based on the open source and free statistical language R using the Gnome graphical interface. The application runs under GNU/Linux and MS/Windows. The ... [More] aim is to provide an intuitive interface that takes you through the basic steps of data mining, as well as illustrating the R code that is used to achieve this. Whilst the tool itself may be sufficient for all of a user's needs, it also provides a stepping stone to more sophisticated processing and modelling in R itself, for sophisticated and unconstrained data mining. InstallationSee the Rattle Home Page for details of installation. For specific operating systems, see GNU/Linux MS/Windows Mac/OSX [Less]

LCMStats

LCMStats : An R package for detailed inspection and analysis of LCMS data.

Gumtree

Gumtree is a cross-platform scientific workbench for instrument control and data analysis.

pebl-project

Pebl is a python library and command line application for learning the structure of a Bayesian network given prior knowledge and observations. Pebl includes the following features: Can learn with observational and interventional data Handles missing values and hidden variables using exact and ... [More] heuristic methods Provides several learning algorithms; makes creating new ones simple Has facilities for transparent parallel execution using several cluster/grid resources Calculates edge marginals and consensus networks Presents results in a variety of formats Pebl Documentation includes installation instructions, tutorial and API reference. Pebl has been developed at the Systems Biology lab at the University of Michigan and is available with a permissive MIT-style license. Update 3/6/2009Pebl is now published in the Journal of Machine Learning Research. Please cite the paper if you use Pebl for your work. Abstract and PDF [Less]

niak

NIAK is a library of modules and pipelines for fMRI processing with Octave or Matlab(r) that can run in parallel either locally or in a supercomputing environment. Linux OS and MINC file format are supported. NIAK currently includes a T1 preprocessing pipeline, a pipeline for correction of ... [More] structured noise by component selection in ICA (CORSICA), as well as an fMRI preprocessing pipeline. NIAK features powerful pipeline management capabilities, including parallel computing, generation of detailed logs and automatic handling of pipeline failures or updates. [Less]

circos

Circos creates data visualization with a circular layout. Currently, its primary use is to visualize genomic data that relate positions (alignments, conservation, synteny, rearrangements), but it is sufficiently flexible to be used in any application where a linear layout of scale is inadequate.

IP-Link

The goal of IP-Link is to see the relationships between different IP from network traffic capture, thus quickly for a given address with the IP that communicates the most.