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XWiki is a WikiWiki clone written in Java that supports many popular features of other Wikis like the Wiki syntax, version control, attachments, security, and searching, but also many advanced features like templates, database and dynamic development using the velocity or groovy scripting language
Hatta is a small wiki engine for use inside a Mercurial repository. It can run locally and doesn't require any configuration; it's just a single Python file. It can be also configured to run on a Web server. Since the wiki can be cloned and merged along with the repository, it's perfect
Piggydb is a flexible and scalable knowledge building platform that supports a heuristic or bottom-up approach to discover new concepts or ideas based on your input. You can begin with using it as a flexible outliner, diary or notebook, and as your database grows, Piggydb helps you to shape or elaborate your own knowledge.
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