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This is yet another C++ version of the getopt function, that is, for parsing command line options and environment variables. However, unlike other versions, the design goals of this one are: EASY to use EASY to learn mimc STL's streams minimum code to type smooth integration with STL types ... [More]
Library to debug STL containers, specially useful from GDB. This project belongs to FuDePAN. IntroductionThis library helps to debug C++ applications that use STL. It's specially tuned to overcome the issues that GDB has as of version 6.8. Basically, the library provides functions to inspect ... [More]
This program provides a clustering algorithm for Protein Backbones based on the FUD (Fudepan Ubiquitous Distribution), that in turns uses the volunteer computing framework of BOINC (Berkeley Open Infrastructure for Network Computing). FUD spinoff ongoing. This project belongs to FuDePAN.
The programs of this project use the following packages: perl packages: sequtils C++ packages: MiLi ( >= 12.3 ) FX-Parser OdfGen This project belongs to FuDePAN.
An algorithm for approximating the volume of a compound object by keeping track of its members' positions in space. This project is part of FuDePAN.
HPC Distribution middleware abstraction. Source code being moved from ParallelClusterer to here, as a spinoff of the L1 and L2 layers. This project belongs to FuDePAN.
This program expands a fasta alignment containing pseudonucleotids, in a cartesian-product fashion so the resulting alignment contains only real nucleotides (A, T/U, C, G). Python version 2.x is required. The source code is NOT compatible with Python 3.x. This project belongs to FuDePAN.
Calculates the minimum amount of changes to develop antirretroviral resitance. The input of the program is an alignment without pseudonucleotides in the relevant positions. If you have an alignment WITH pseudonucleotids, use --auto-expand option; you'll need FastaExpander to run this option. This project belongs to FuDePAN.
This project aims to build a database of possible protein backbones. The prototype (serial) version only is provided here. The serial application uses the XTC_Library from GROMACS, and MiLi. This project belongs to FuDePAN.
Some simple useful tools and libraries for Sequence Analysis and Processing. This project belongs to FuDePAN.