Projects

OpenSCB

OpenSCB goal is to create a fully open source servo controller. That means that we have designed a board with all the hardware to interface with classic RC servos, AX-12/AX-18 servos, openservo and more... It's using a powerful 32-bits micro-controller and it has an USB port for programming ... [More] and control with a PC. The schematic and layout will be available and you will be able to use them and customize them as you need. To go with this board, we have built an embedded software which let you use all the feature of the board. We tried to keep the design as flexible as possible so you should be able to reuse only the part you need from the software. We are also developing a graphical interface for your computer to configure, calibrate and control the board. [Less]

Npackd

a tool that automates installing and uninstalling of application on the Windows operating system

xogcc

A GUI GCC activity for the OLPC XO-1.xogcc basicly is a sugar wrapper for the GNU applicationn GCC collabaration will be added and a IDE is in the works. Designed by EKG.

ccoverage

Check which C functions are not covered by the test suite and create a report. Optionally patch those functions to ease creating tests for them. Currently targets CPython's codebase.

gbparsy

WelcomeGBParsy is a library of functions that parses the GenBank flatfile, which is a representative and popular sequence format. The library is optimized for speed and efficient use of memory so it can rapidly parse large sequence such as Arabidopsis chromosome for genomic analysis. GBParsyPy is ... [More] additional version of GBParsy for the Python. GBParsyPy adopted GBParsy as a core parser so GBParsyPy inherited all of its features from GBParsy. Current StatusVersion 0.5.4 of GBParsy and GBParsyPy is stable and is recommended for all users. ChangesFeb. 20th, 2007 The project name is changed from GBFP to GBParsy. However, we would not change the program name in order to prevent confusion. Hence, please, visit GBFP homepage. [Less]

cibyl

Cibyl is a programming environment and binary translator that allows compiled C programs to execute on J2ME-capable phones. Cibyl uses GCC to compile the C programs to MIPS binaries, and these are then recompiled into Java bytecode. Cibyl programs are regular compiled Java programs, and Cibyl ... [More] therefore performs relatively well. With Cibyl, C programs can be ported to J2ME without switching language. It also allows C and Java code to be integrated in an easy and efficient way. The environment uses the GNU toolchain (GCC and binutils) and should work in all environments which provide them. Full-scale C applications, such as the Sarien AGI interpreter shown below has been ported to J2ME devices using Cibyl. [Less]

gcc-python-plugin

GCC plugin which links embeds Python inside GCC, allowing you to write new GCC passes (e.g. new warnings) in Python, rather than C. The project includes "cpychecker", a example pass which detects reference-counting bugs and other issues in Python C extension code.

gbfp

WelcomeGBParsy is a library of functions that parses the GenBank flatfile, which is a representative and popular sequence format. The library is optimized for speed and efficient use of memory so it can rapidly parse large sequence such as Arabidopsis chromosome for genomic analysis. GBParsyPy is ... [More] additional version of GBParsy for the Python. GBParsyPy adopted GBParsy as a core parser so GBParsyPy inherited all of its features from GBParsy. Current StatusVersion 0.6.1 of GBParsy and GBParsyPy is stable and is recommended for all users. ChangesVersion 0.5.4 (Feb. 29, 2008) The project name is changed from GBFP to GBParsy. However, we would not change the program name in order to prevent confusion. Version 0.5.5 (Apr. 30, 2008) Fixed segmentation fault for a sequence containing a too long note, such as NC_003070 (Arabidopsis thaliana chromosome 1, complete sequence) version 6. Version 0.5.6 (May 14, 2008) Checked GBParsy by Valgrind for 2660 chromosome, plasmid and organelle sequences downloaded from GenBank and fixed a few memory leak bugs (Valgrind logs). Version 0.5.7 (Jun 25, 2008) Added medline and remark entry in the reference data Increased flexibility to parse LOCUS line in safety Added new option(-s) to seqext and seqext.py to search qualifier data Version 0.6.0 (July 10, 2008) Added a Python class, gbparsy, which generates a SeqRecord instance of BioPython from a parsed result. Version 0.6.1 (July 26, 2008) Fixed memory leaks of GBParsyPy Increased compatibility with SeqRecord of BioPython Changed Python example for new GBParsy class PublicationT.-H. Lee, Y.-K. Kim and B.H. Nahm (2008) GBParsy: A GenBank flatfile parser library with high speed. BMC Bioinformatics, 9:321. ContactIf you have comments, questions and suggestions to the GBParsy, please use Wiki or Issue system or send a mail to thlee@bio.mju.ac.kr. [Less]