Projects tagged ‘itk’ and ‘python’

Insight Segmentation and Registration Toolkit (ITK) is an open-source software system to support the Visible Human Project. Currently under active development, ITK employs leading-edge segmentation ... [More] and registration algorithms in two, three, and more dimensions. [Less]

Grassroots DiCoM is a C++ library for dealing with DICOM medical files. It is automatically wrapped to python (using swig). It supports RAW,JPEG,J2K,JPEG lossless,RLE and deflate(zlib). It also comes ... [More] with DICOM Part 3,6 & 7 of the standard as XML files. [Less]

BioImageXD - free open source software for analysis, processing and 3D rendering of multi dimensional microscopy images. BioImageXD is a collaborative open source free software project, designed ... [More] and developed by microscopists, cell biologists and programmers from the Universities of Jyväskylä and Turku in Finland, Max Planck Institute CBG, Dresden, Germany and collaborators worldwide. [Less]

DeVIDE, or the Delft Visualisation and Image processing Development Environment, is a cross-platform software framework for the rapid prototyping, testing and deployment of visualisation and image ... [More] processing algorithms. The software was developed within the Visualisation group. DeVIDE's primary (and currently only) front-end is a data-flow boxes-and-lines network editor. In this regard, it is very similar to AVS, OpenDX, Khoros or VISSION. DeVIDE integrates functionality from libraries such as VTK, ITK, GDCM, DCMTK, numpy and matplotlib. It is being very actively developed. [Less]

Some contributions to be integrated in ITK

WrapITKAutomated dynamic language binding for Insight Toolkit (ITK) WrapITK is an effort to automate the language binding process of one of the largest highly template-oriented c++ libraries, the ... [More] Insight Toolkit image processing library. Currently Python, Java and Tcl language bindings are implemented, but only Python is fully supported. For ITK .NET languages wrapper you may refer to ManagedITK. Download binaries NEWBinaries for multiple platforms and architectures, including Linux, Mac and Windows, are available. See the binaries wiki page for currently supported platforms and installation instructions. Compilation instructionsThis project involves the development version of WrapITK which normally requires the development version of ITK accessible from here. In addition, the following tools and libraries are required: CMake (>= 2.4.8): For configuring the compilation system. CableSwig (>= 0.1.0): For parsing and automatic instantiation of c++ templates. SWIG (>= 1.3.35): For language binding. >= 1.3.38 is recommended for documentation wrapping. Python (>= 2.4): Some code generating processes are currently implemented in python. Mac OS X requires Python >= 2.5 for Python support, because of a bug in previous releases on that plateform. Doxygen (>= 1.3.9.1, optional): For automatic generation of inline documentation in the target language (coming soon). This is optional, but highly recommended, as ITK is a huge library. Enabling this feature provides the access to instant documentation in a modern IDE with code assistance. Language binding development libraries: The interfacing libraries for wrapping language of choice, eg, JNI for java binding. Language supportSince WrapITK uses SWIG for language binding, in principle, any languages supported by SWIG may be used to wrap ITK. If you are interested in adding an additional language, you are encouraged to participate to the project. Interface to other librariesIn addition to language binding, WrapITK also implements import/export of image data from/to the following libraries: Visualization Toolkit (VTK) NumPy FEniCS DOLFIN (Coming soon) To enable these features, you need to first compile WrapITK. The code for each interface can be found in ExternalProjects directory. Simply use CMake to start building these interfaces. HelpPlease report WrapITK related bugs using the issues page. You may also ask for configuration and compilation help in the ITK mailing list. AuthorsGaëtan Lehmann, INRA, UMR1198 Biologie du développement et reproduction, Domaine de Vilvert, F-78352 Jouy-en-Josas, France ; CNRS, Domaine de Vilvert, F-78352 Jouy-en-Josas, France ; ENVA, F-94704 Maisons Alfort, France. Zachary Pincus, Program in Biomedical Informatics and Department of Biochemistry, Stanford University School of Medicine, Stanford, California Benoit Regrain, CREATIS, CNRS UMR 5515, Inserm U630, Univ. Lyon1, INSA Lyon, 69621 Villeurbanne, France Ali Tonddast-Navaei [Less]

Provide automate Python wrappers (bindings) for medical imaging toolkits originally in C/C++: VTK GDCM ITK