Projects tagged ‘kepler’ and ‘workflow’

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Projects tagged ‘kepler’ and ‘workflow’

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[3 total ]

7 Users
Kepler Project
 

The Kepler scientific workflow system is an open source application designed to help scien­tists, analysts, and computer programmers solve the problem of analyzing data stored in a variety of formats ... [More] with software components deployed and invoked in different ways. Using Kepler's graphical user interface, users simply select and then connect pertinent analytical components and data sources to create a "scientific workflow"—an executable representation of the steps required to generate results. The Kepler software helps users share and reuse data, workflows, and compo­nents developed by the scientific community to address common needs. [Less]
Created about 1 year ago.

0 Users
KeplerWeka

KeplerWeka adds the functionality of the open-source machine learning and data mining workbench WEKA to the free and open-source, scientific workflow application, Kepler.
Created 8 months ago.

0 Users
waters16s

A Kepler workflow designed to automate the essential bioinformatic tasks from 16S rDNA contigs to biological interpretation and analysis. Programs that are bundled into the workflow include profile ... [More] alignment using either Infernal or STAP, chimera checking with Mallard, OTU clustering and determination with OTUHunter, taxonomy assignment with STAP and then a variety of file formatting options to automatically generate results files using Unifrac, Cytoscape, Dendroscope, heat map visualization. Diversity statistics such as Chao1, Shannon, Rarefaction and rank-abundance are also automatically generated. NOTE: The WATERS download to the left is a "stand alone" version for Mac OSX 10.5 (Leopard) only. In order to use WATERS on another system, you will need to first follow the instructions in the NonLeopardInstall wiki page. [Less]
Created 3 months ago.
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