Ohloh by Black Duck

 Follow @ Meta   Join Now

 

Projects

Browse Projects By Tags Add a New Project
Selected Tags
Related Tags

Browsing projects by Tag(s)

Select a tag to browse associated projects and drill deeper into the tag cloud.

Showing page 1 of 1

waters16s

Compare

A Kepler workflow designed to automate the essential bioinformatic tasks from 16S rDNA contigs to biological interpretation and analysis. Programs that are bundled into the workflow include profile alignment using either Infernal or STAP, chimera checking with Mallard, OTU clustering and ... [More] determination with OTUHunter, taxonomy assignment with STAP and then a variety of file formatting options to automatically generate results files using Unifrac, Cytoscape, Dendroscope, heat map visualization. Diversity statistics such as Chao1, Shannon, Rarefaction and rank-abundance are also automatically generated. NOTE: The WATERS download to the left is a "stand alone" version for Mac OSX 10.5 (Leopard or higher) only. In order to use WATERS on another system, you will need to first follow the instructions in the NonLeopardInstall wiki page. [Less]

0
 
  0 reviews  |  0 users  |  0 current contributors  |  Analyzed 4 days ago
  workflow archaea bacteria 16s kepler ecology rna ribosomal rrna bioinformatics mallard microbial 3 more...
 
 
 
 

Creative Commons License Copyright © 2013 Black Duck Software, Inc. and its contributors, Some Rights Reserved. Unless otherwise marked, this work is licensed under a Creative Commons Attribution 3.0 Unported License . Ohloh ® and the Ohloh logo are trademarks of Black Duck Software, Inc. in the United States and/or other jurisdictions. All other trademarks are the property of their respective holders.