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J-Pilot is a desktop organizer application for PalmOS devices. It is meant to be an alternative to the Palm Desktop for those who run the most popular Operating Systems in the World, Linux and Unix.
This project was originally a quick and dirty method for me to convert my ebook collection in various formats to a kindle compatible format without worrying about the ebook source type. It takes PDF, Lit, and HTML files and converts them to .mobi.
ProDy is a free and open-source Python package for analysis and modeling of protein structural dynamics. It allows for efficient analysis of large datasets and is suitable for development or prototyping of structure-based analysis and modeling software.
Molecular View is a desktop application for the visualization of protein database (PDB) files. It interprets ".pdb" and ".ent" files, allowing the visualization of the correspondent 3D molecules. PDB example files can be downloaded from wwwPDB. The software also enables exporting ... [More]
MMDB is a macromolecular coordinate library, written by Eugene Krissinel. It supports reading and writing two file formats, PDB and mmCIF, and provides high-level tools for working with coordinate files: orthogonal-fractional coordinate transforms, generation of symmetry mates, editing the ... [More]
Hollow helps to visualize and quantify voids, pockets, and channels in protein structures. It generates fake atoms that fill space inside a structure specified in the PDB format. The output is a standard PDB file containing the fake atoms. The molecular surface of these atoms is an excellent ... [More]
SummaryZenPDB is a Python module to process and analyze macromolecular structures. Macromolecular structures are represented as hierarchically nested python dictionaries, which allows to traverse and manipulate them in a pythonic way and implement structural biology algorithms compactly. This module ... [More]
This project makes it easy to access data in palm PDB database files. Because each application's record structures are different, this project lets you write a minimal amount of code: you describe the format of records in the applications you want to access, and rubypdb takes care of the rest. ... [More]
Introductionpdb-tools is a set of command line python scripts that manipulate wwPDB macromolecule structure files. There are many programs, both open source and proprietary, that perform similar tasks; however, most of these tools are buried within programs of larger functionality. Thus ... [More]