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Coot is a suite of programs for macromolecular model-building using X-ray data incorporating interactive molecular graphics including refinement, rebuilding and model validation. Coot is built on top of several layers, including the GNU Scientific Library, GTk, Guile, guile-gtk, coordinate ... [More]
GNAT is a library and web service capable of performing gene entity NER and normalization of biomedical articles. Mentions of genes and proteins in the articles are linked to to Entrez Gene identifiers. GNAT is available both for local download (suitable for large-scale processing) and as a web ... [More]
This is a software that helps you to search the Ncbi Website(Enterz Databases) for your specific query making the fuss a lot simpler. All you have to do is select the type of search you want to do like on proteins or nucleotide or 3D domains or 3d structures or gene or dna or structure or gnome,etc ... [More]
PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. It is maintained and distributed for academic use free of charge by Ziheng Yang. ANSI C source codes are distributed for UNIX/Linux/Mac OSX, and executables are provided for MS Windows. PAML ... [More]
PConPy is an open-source Python module for generating publication-quality protein contact maps, distance maps, and hydrogen-bond plots. PConPy can be used as a standalone application or as an extension to existing source code. The maps generated by PConPy are vectorised and can therefore be scaled ... [More]
AQUA is a suite of programs for Analyzing the QUAlity of biomolecular structures that were determined via NMR spectroscopy. AQUA was developed by Ton Rullmann and Jurgen Doreleijers in the NMR Spectroscopy Department, Utrecht.
Signals to be passed to cells either pass the plasma membrane (like for instance some hormones with receptors in the nucleus) or they are sensed on the cellular surface by membrane proteins (olfaction, inflammation, ..., the presumed majority of sensory events). Albeit frequently overseen in ... [More]
Popitam is a method designed to characterize peptides with mutations or unexpected post-translational modifications using MS/MS data.
Mostly matlab code. Interactions are predicted using domain to domain interaction information, as well as hidden Markov models and support vector machines.
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