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nemesis is an experimental finite element code. nemesis consists of two parts: a C++ core, embedding the Python interpreter, capable of undertaking a wide variety of static/transient/eigenvalue problems accounting for material and/or geometrical nonlinearities, and extras, a set of Python scripts ... [More]
LaJolla can perform 3D alignments of RNA and protein structures. It is fast, simple to use and well tested. LaJolla is successfully published in a peer reviewed journal.
Given a subset of the assembler instruction set, write a program and generate the Control Flow Graph for that program. Write a genetic algorithm that using the previously generated graph, finds a set of values for registries EAX, EBX, ECX and EDX that will assure the total coverage of the graph, in ... [More]
SummaryZenPDB is a Python module to process and analyze macromolecular structures. Macromolecular structures are represented as hierarchically nested python dictionaries, which allows to traverse and manipulate them in a pythonic way and implement structural biology algorithms compactly. This module ... [More]
lovoalignLovoalign is a new structural alignment package. The methods used for structural alignment are based on Low Order Value Optimization (LOVO) theory. The use of LOVO theory led to the development of fast convergent algorithms that provide very robust optimization of scoring functions. ... [More]
P53 Cancer Rescue Project, University of California, Irvine , Samuel A. Danziger, Christopher Wassman, Faezeh Salehi Amiri, Roberta Baronio, Linda Hall, Rainer K. Brachmann, G. Wesley Hatfield, Peter Kaiser, Richard H. Lathrop
This library provides a Xquery-Xpath full-text syntax extension for berkeley db xml using xapian db as IR engine. The IR lookup can be made in two different ways: 1) The standard one, that looks for information hidden in non-structured well-specified nodes 2) An approximated way that scans all the ... [More]
This sample eclipse project contains GoF design patterns structural code. To get sources : svn checkout http://patternsbox.googlecode.com/svn/trunk/ patternsbox-read-only
A diffing utility that provides delta calculation services between java objects (java beans to be precise).
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