Projects

BioImageXD

BioImageXD - free open source software for analysis, processing and 3D rendering of multi dimensional microscopy images. BioImageXD is a collaborative open source free software project, designed and developed by microscopists, cell biologists and programmers from the Universities of Jyväskylä ... [More] and Turku in Finland, Max Planck Institute CBG, Dresden, Germany and collaborators worldwide. [Less]

InVesalius

InVesalius is a medical public software which aims to assist diagnosis and surgical planning. Based on a sequence of two dimensional (2D) DICOM images, acquired through computed tomography or magnetic resonance equipments, InVesalius software allows the reconstruction of virtual three dimensional ... [More] (3D) models, correspondent to the anatomical region of interest. Both volume rendering and 3D surface export to STL, OBJ and other file-formats are supported. The software has shown to be versatile, contributing with various fields, among which medicine, odontology, veterinary, archeology and engineering. InVesalius is multi-platform (GNU Linux, Windows and MacOS X) and internationalized (English, Portuguese, French and Spanish). [Less]

molecular-view

Molecular View is a desktop application for the visualization of protein database (PDB) files. It interprets ".pdb" and ".ent" files, allowing the visualization of the correspondent 3D molecules. PDB example files can be downloaded from wwwPDB. The software also enables exporting ... [More] the 3D model to ".stl" (binary) and ".vrml" (2.0) file formats, frequently used for Rapid Prototyping physical reconstruction. The software is written in Python 2.5. Visualization Toolkit VTK 5.1 is used both for visualization and file conversion. In regards to the user interface, wxPython 2.8 was used. Molecular View is multi-platform (Windows and Linux). The team who developed Molecular View is also responsible for the 3D Medical Reconstruction software InVesalius, which is inserted into the project Rapid Pr [Less]

in-stl

InSTL is a free software for visualization and edition of STL files. STL is a file format native to the stereolithography CAD software. It is widely used for rapid prototyping and computer-aided manufacturing. STL files describe only the surface geometry of a three dimensional object without any ... [More] representation of color, texture or other common CAD model attributes. The STL format specifies both ASCII and binary representations. Binary files are more common, since they are more compact. InSTL software currently supports only binary format, but might be easily extended. The software offers operations such as rotation, translation and rescale of the model. It is written in Python 2.5. Visualization Toolkit VTK 5.1 is used both for visualization, interaction and volume edition. In regards to the user interface, wxPython 2.8 was used. Molecular View is multi-platform (Windows and Linux). The team who developed InSTL is also responsible for the 3D Medical Reconstruction software InVesalius, which is inserted in the project Rapid Prototyping applied to Medicine (Promed), and for Molecular View, PDB file viewer. [Less]

headset

HeaDSET is a student developed computer assisted surgery suite. It allows the user to plan, simulate and playback brain tumor surgeries. It was developed at the University of Twente during a semester for a final BSC project. The implemented software was written in Python using VTK and wxPython. ... [More] HeaDSET was developed by J.H. Donker, S.G.Epskamp, J.K. Hendrix, T.L. Siaw, J.Teeuw For screenshots click here [Less]